NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302202_10294327

Scaffold Ga0302202_10294327


Overview

Basic Information
Taxon OID3300028762 Open in IMG/M
Scaffold IDGa0302202_10294327 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054501Metagenome139Y
F102388Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0302202_102943271F054501GGAGMIRSTNGPMRGQYEARSSIVHSCSPRAVCSRPCAMVLSDHRRNGSVRLIPPYSTALFRLIRFAPKLRRCAQTPHGSSSVPARIDQSKFLQMAQIIAQRSISRMGIDLNADSGKLAFPPTIDGLKNLALRFIKVMYDAKRRNRSARQEPIADCSSDFLELRLQGRRLGTAQRHPIQIFVLHETMRTMNTEVRMPIATQAEELVVWTQPKTLAEAKSLFAPYSPK
Ga0302202_102943272F102388N/ALSILLPAGWMAKQWIDRQEDRFLDHMYWREPLDSWRL
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