Scaffold Ga0272447_1044394

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272447_1044394

Scaffold Ga0272447_1044394

Overview

Basic Information
Taxon OID	3300028761 Open in IMG/M
Scaffold ID	Ga0272447_1044394 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	712
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5761	Long. (^o)	-110.7905	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009590	Metagenome / Metatranscriptome	315	Y
F055337	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272447_10443941	F055337	N/A	VETLSVLSGLSRLPALAAAGETLYLLTPAAGLAYIVASQLVGQPASTRARPTPPAQAKRDPQPERAYAQPEHAYSLNGHDPK
Ga0272447_10443942	F009590	GAGG	MHVHSRDIGGIPGGPRPPEGAGWRIEVNLARGCYRWTRRYGSKRQWTAYRPLAELPPERIRQAQAESERQRQARQVARAMVR

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