NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272447_1020945

Scaffold Ga0272447_1020945


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1020945 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035590Metagenome / Metatranscriptome171N
F043791Metagenome / Metatranscriptome155N
F052993Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10209452F043791GGGGGMIENVLVAGLATVYFAFVFTAKRGPFDFFAKIRAAAKRVPVLGYHLSCPTCLSLSSGALLFALTFTPLAFVVHVMAVAGIVLALHGMAGYWHSKDDEPYSSV
Ga0272447_10209453F052993AGGMSRIHQFKAKAFQRVARKFNLRCYAFSHRNNQWLVAIRGNIVILSPTLIPIAPDIADIRRLGNEKDYELFLTLTGLGVKQSLRYQLVATGNFTTLYPKYNHAIFSRSNQHVYSTRWRSIALAHAQYLSRRIKQPPCMQIAEDVERGKLMIALNYARMGSFYIFVNGIPIDYAYPFHEQCSPQVYFGERKMLMKDNVVPWLNRLERTQLLPLPTPPPTLEQVLDKSASFDYHDEHGQEEDYPGTD
Ga0272447_10209454F035590N/AMTSMDKKKIILEQIERLLEHYPYDGRDIFYLNFNGLVTLTFSVDSDGIVTLEEASVDGQFAIDLDRI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.