Scaffold Ga0272447_1007003

Overview

Basic Information

• Taxon OID: 3300028761
• Scaffold ID: Ga0272447_1007003
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5761
  • Long. (^o): -110.7905

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272447_10070032	F007033	GGA	VLRPIRRIAFETVLTESPAPTDFDLLNSMLYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVIWARRVGVSQAAPIPIEPGTVQVRLLFPSDSTITKYEFSFDFAQSLMDFELVPVFAGAEMLDYVPLIATQLAHTWDAIDQRLRVAVYALYARGAGERYIPITGLDAFLELRNNANTLISTTFTEIAPGLYEDSPLNLPQSGNPYTIRVGSLAPVGAFDYTTAIAQFNV
Ga0272447_10070033	F024322	AGG	VSLLRKLRNARQWRYLRLVDPVRQRFEFCPVWANYLNPPSPVQVDTSVGTLTIETGVVRSFAREYDVSSFSFPFSAEERVAFHPPPIFVAHYNEFSQIAARQKHAFLAVVPDARVGKSEWGEVEYEAFFFAPALDSEDFEVQLDRIAGVRESLLELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0272447_10070034	F044249	AGG	MTKREAIFALLGASLAIVAKKYVMVLAALIVLGSLANFLGWLHAIVSGEGCRALKILQGTARLVFYLVFYVALLVALEQVASYLIPPLLSVAIIYEASLALRKAVQLNIIPVGLVRHLTKVLHREPPEKAS
Ga0272447_10070036	F038584	N/A	MTEEIKQIQKAAEELNAVLHATAATQEEIKTLDAISKAAAHIRQQLRDQQPNAGTRIKVRELRAARKLMQRYIQKTSVGTNTPREYVGESFYVTRQPVIEFIQDYLRTETLEVLAEITQVRLNPFTGSPATVPEGGTKPPMFTTPQRFITNFQKISFTDLITDEALLSYPNIVDFLIWHGAYQLEVFLHNALIIAIFSIASSATLPTGIPTPQIADLLIYMRAFHDQQAAIGPRGDWPANIAIVPFPYYWRLVFGGLKNTNGDYIQLDRQLQGLTLIATGLAQNLPTIVLNENEMEVFYLGDITVNFGRVFDAASETNVRRLSMDLFYAPLPHASRPVIVANTQNAINSMA