Scaffold Ga0272447_1003712

Overview

Basic Information

• Taxon OID: 3300028761
• Scaffold ID: Ga0272447_1003712
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6851
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5761
  • Long. (^o): -110.7905

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029452	Metagenome / Metatranscriptome	188	Y
F033055	Metagenome / Metatranscriptome	178	Y
F036249	Metagenome / Metatranscriptome	170	N
F050400	Metagenome / Metatranscriptome	145	N
F050402	Metagenome / Metatranscriptome	145	Y
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272447_10037121	F050402	N/A	MFSQLPTTRKGAIAERYVRDVLVGMGWHIYTYSADQPHPVDMIAITPDGRLVAVEVKCKCARIYYPDTGIDRNDYYAYHNLQSQLNLPVLLLFVDHYTRTVYGNYLDYLSQPITIVDNQRELVYPMIGEQYVYFPLQVMEHYADIPPAVVAQLNTRTYSKYHHSPPHTNDVDGDGV
Ga0272447_10037123	F033055	GGAG	MVYPNQVLENRNWTDSAGVGILLALGENDGIYIYNTSPVNELELGMPQEVVNCELRVQSDGMNPPLMMQFFLDGNFVDSIILPTTNNWVVHTLTVDRWDSVLLSVSVGGTVGVDFLRAVAADVSITRKTLTGVGI
Ga0272447_10037124	F029452	GGGGG	MIYEYRCIGCGWLTVAKRTVEQRDVAPRCERCGKLTQRVFPPRAQIVIPRAFQLECAREAAKLVLPSTPDEKRYWDTFGIMEDGDGE
Ga0272447_10037125	F092114	N/A	MRELVSITRHKMEQLLGDNPPKRDTWLLKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVIDFGTDTQLYQMEFSNFLATNELALRDAILQRLVVGLGAVSVVGDTQNGWRLQSISPNDLWWDTTTGDVMQPKWIARAYRDSNGQEYREVWYADVYHRYPVGGADVETFHNPYGVIPIVLFPAHYIPDTVYPIGDVELACPQQFILDEIRRTFLNMARRGAGFFSVKQTSIDETELSRLQNPDEVYILVKEQDAIVPIPTPPPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPTGTAVPRALEDTITSANQLLQTEMVGNAPSGNISATQSV
Ga0272447_10037127	F036249	GGAG	MQFNPNTSHYASAVGAWLDNNFRDQFTITTAFLEKLKQRGAFKRGSAYLVQPVFGTGNPSVAGVSNFNAPMGIPADTGLSAVFTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSSVAQFGQVISNDLFSTTDATLGKIAGIPYAVDRPTTTANSYGGISRSNTVNPWWRAVVVDGGNQPLTLQRLADAYNRATENGGISPDIIVMPTAHFSAFESLLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTIFILNSRDIMLVSQTERPSAEPVEFPDRLVRGYKHGWAVALVAKRLNSNARINNITP
Ga0272447_10037128	F050400	GGGGG	VITVGIYNRHYQPVLERILEPARAVLLLTTDGVYTFTSITPAPLPHNYPITSAIANKHYALQIPTAPPYPSYRRAGKTIAVELCVDTAQSYTVQYQHNGTQQPPLTIQSLPQPNYPLYERTPIYPFAHNHLAGYLYDVRIVGRYQAGGMDIAIPSTHSGIITTVCIPLGDTTHLYSAYRNSSGEWKIIIRNPDGSELADETNVDTYLRVYVWSYYR