Scaffold Ga0272447_1002537

Overview

Basic Information

• Taxon OID: 3300028761
• Scaffold ID: Ga0272447_1002537
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9605
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5761
  • Long. (^o): -110.7905

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016816	Metagenome / Metatranscriptome	244	Y
F050401	Metagenome / Metatranscriptome	145	N
F070159	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272447_10025371	F016816	GGAGG	MLTVYNPYTGQWERLDDVVRPLPVIARDTRLVAVNDTTPFVPSFATTNSPSHTDIFGSTNALRANIGIVVGNTGADVVIPDAWRIRRVIVLANRTATGSTSVGIHCVVYARLLAPDGTPTSWRTLATTSEASPSSYVLRFALPASLAGVFGYDQYRIVFRRDTESDPAPQLSLIRVYAEF
Ga0272447_10025376	F070159	GGTGG	MNTMKRIWRGLQKRIARAVIQYALEQLVISPELLHEIQRRTKLSAGVARIITEVVFDSIVRALNEALEKYDE
Ga0272447_10025378	F050401	GGAGG	MKWFTRMFTLPKRYNSLSDIARDPFGALLNAAQWAVPLAMGLPGGFSALPKLLSNPALLAKWSLGNAPQFFGAKGAITTQSVMNWFKNPSNLALVAGGLSYLDQSRRARQASAQLDAFRQQLSGLGELERLFNTQLLNQRLNAVGTVLNPAFAIAQLRAMETDTANRARRMMDIAGVKSQRSVENALVRTAGDLARQRALIPLQYAQATLGIPLGMQYTPLLGSLLGQQRADELLALQQLIPALLQLYAYTRGITPTQTAGTTGG