Scaffold Ga0307297_10029972

Overview

Basic Information

• Taxon OID: 3300028754
• Scaffold ID: Ga0307297_10029972
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1592
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004217	Metagenome / Metatranscriptome	448	Y
F009855	Metagenome	312	Y
F027013	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307297_100299722	F004217	AGGAGG	MEREDVEFRAANERITTMAEELRKAELVRDRLEGLDRLMGSYPEGHEMRERLETLHVDSALEGVNEDIRGLMDALQHPRGT
Ga0307297_100299723	F027013	AGGAGG	MQDRIEQNALELLHAIRVHHPDIYAGAWVNPYTAALEAGLDPDSAHYRAAMEYLQAEEALEWAEESLELAGSPLYTITLRGMAMLPEL
Ga0307297_100299724	F009855	GGCGG	MHPHLSREAIVLDLETTRYGRTYAGRRVKITHVQKDPSTGGAVGYVVRLEEGDELPFEAGEIHVVEAWD