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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028754 Open in IMG/M |
| Scaffold ID | Ga0307297_10026016 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1688 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001183 | Metagenome / Metatranscriptome | 755 | Y |
| F004217 | Metagenome / Metatranscriptome | 448 | Y |
| F016872 | Metagenome / Metatranscriptome | 244 | Y |
| F019060 | Metagenome / Metatranscriptome | 232 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307297_100260162 | F016872 | AGGGGG | MPNDQTVKDATRLLGAFSTNHAEARMASPHGMDRPFYPSWADAEQAGLDRARRDTAIRWLVEKNMLESEGEPENPLDAGEGFYSKYGSVFRITDIGRELLEEVLERRPE |
| Ga0307297_100260163 | F004217 | AGGAGG | MERDDVEFRAANERITTMAEELRKAELVRDRLEGLNRLMGSYPEGHNMRARLEALHVERALEGVEEDIRSLMDALQHPRGT |
| Ga0307297_100260164 | F019060 | GGAGG | MGEEREKQERIHKMAEDLILSKLQQIHGHLAAVEQMAASYPKDHSTRLLIESLELYKARTVVEDDIVRVRGSLGYGTQGYGTL |
| Ga0307297_100260165 | F001183 | GGAGG | LSEEERRQRVRELVHKKTGMDWPTLRVGDIQKSMSSATVSYWCTEEDVGKRGHQKQLELTDEEARLLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |