Scaffold Ga0307297_10000322

Overview

Basic Information

• Taxon OID: 3300028754
• Scaffold ID: Ga0307297_10000322
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11515
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001245	Metagenome / Metatranscriptome	737	Y
F002921	Metagenome	520	Y
F016872	Metagenome / Metatranscriptome	244	Y
F019060	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307297_1000032212	F002921	AGGAG	MATEKSSAPAHPSTEEHDDTVEAHYASLERPHACLEGLVFVGYVDEDGEEREASYRCRRCTDSR
Ga0307297_1000032217	F001245	AGAAGG	MLKHMRRQILGKPAPYVEVRAAAINVGLDPGGSECRALVDELLRAGYLQRYPSPSLTAHGLYRLTDSGIVAADEAVLDEARRRRRLNGEEER
Ga0307297_1000032218	F016872	AGGAGG	MPNDQTEQDATRLLGAFSTNHSEARMVSPHGTDRPFYPSWADAEQAGLNRVRRDTAIRWLVENNMLEREGEPESPLDTGEGFYSKYGLVFRITDAGRELLEETSERGQA
Ga0307297_1000032219	F019060	GGAGG	MGEERQEQERTHKMAEDLILSKLQQIHAHLAAVEQMAASYPEDHSTRLLIESLELYKARTVVEDDIVRVRGSLGFGTHGYETL