Scaffold Ga0302156_10143605

Overview

Basic Information

• Taxon OID: 3300028748
• Scaffold ID: Ga0302156_10143605
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F046134	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302156_101436052	F003389	GGA	MQITVWSVAADDDNGTYASVHETECAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKLDVPTAPASADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGLYN
Ga0302156_101436053	F046134	N/A	GFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIELQRQAGHTIYAENLSAMLYGTGPNPARS