Scaffold Ga0302219_10004342

Overview

Basic Information

• Taxon OID: 3300028747
• Scaffold ID: Ga0302219_10004342
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5529
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F024149	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302219_100043424	F000078	GGAG	MHCLRCDHELQPGHKSVALYMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGPSPEGALNLAAWDMIRDLVSSDPALNEAAWDNLRGIVGLLPATGSDGHPRSQPPSGYFEF
Ga0302219_100043425	F024149	N/A	MFAQTVGVKPRQKSAAHRISFCPQCSVSLAMGLPPEGALNMAAWDMIRDLVSSDPALNQAAWENLHGVVGLLQSGESVRDPEPPSDAWVNFRRAG