NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302233_10384215

Scaffold Ga0302233_10384215


Overview

Basic Information
Taxon OID3300028746 Open in IMG/M
Scaffold IDGa0302233_10384215 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000233Metagenome / Metatranscriptome1512Y
F031574Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0302233_103842151F031574GAGGLAVTIRRLEEFDDVENFDCGDEPLNNYLKRHAWTNQQKSSIGVT
Ga0302233_103842152F000233N/AAAVKEKSKNKAPAPKVRKSKFQADLAPSEDSIVRALKAELEMTSNTDFLSDALALFRWAVSERKRGHIIVSESSTGERKILVFPRLERVAPEVALPQVDIHWNDKELESLAELASGQPAQPTKALIRAVRH

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