Scaffold Ga0302233_10143588

Overview

Basic Information

• Taxon OID: 3300028746
• Scaffold ID: Ga0302233_10143588
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 925
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014282	Metagenome / Metatranscriptome	264	Y
F019523	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302233_101435881	F019523	N/A	RVKHPVIGPNSPGESGAPGWGAWAVKIRYSWLEGKAPGITCDASTIPSCPITPGIVPSFSDHTDQLTAGFNWYLNYWVLVKSDFNFNQLKNPSVQGILPRNYFVFVEGIQFRF
Ga0302233_101435882	F014282	AGGAGG	MKPKMFRLLALVALFGAMFILNSCSSGQKNCPVCGTDKNGTIGLIGVMNVPEHNPNGEPGGPFNIFDISWVDPTNRLYYVSDRIGLDVPVFSTTSNIALWAIAGQNSVAEAGNNSSLCWVDPVSGETIPPVTSAQGNFTRFGCKTD