Basic Information | |
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Taxon OID | 3300028746 Open in IMG/M |
Scaffold ID | Ga0302233_10083817 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1269 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002396 | Metagenome / Metatranscriptome | 564 | Y |
F003157 | Metagenome / Metatranscriptome | 504 | Y |
F099394 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0302233_100838171 | F099394 | N/A | SDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI |
Ga0302233_100838173 | F002396 | GAGG | MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLKILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVIAVYSGVSGLLRHEGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTETHDGRAHVDAGEKQDIARKETVERCQ |
Ga0302233_100838174 | F003157 | N/A | RKRENTDPLGFARFGGLDRLDWLMIVVSVLLGTVAKQHHVLDLPDWFLEWVSPFLLMVFGYKARRKITEVVQSRRDRGKGSPEE |
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