Scaffold Ga0302233_10037936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302233_10037936

Scaffold Ga0302233_10037936

Overview

Basic Information
Taxon OID	3300028746 Open in IMG/M
Scaffold ID	Ga0302233_10037936 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2018
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028869	Metagenome / Metatranscriptome	190	Y
F040192	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302233_100379362	F040192	GGAG	VRAIALLFAVLMVGAASCEAKAACKLPMYIQAPHTLGDGTTDTVSLFLYGLKSAVRQHQGCVVDKMTDAHLGLYVTTVNLVNAEGRSDASVIAVALAVPLNGVPVYMDHYVLILRETEAIDGQVNALLESIGETLDRHTLPGQ
Ga0302233_100379364	F028869	GGAGG	MKTIPGMVVGIFLLCSLSATGQTQGAAMSRSSALPTSGHSALENTTNQYDFDFISKGYVWSNKPLKSTAGKICQTMKEHAFSETPYGINGDQDWNNCLSTQIRSIGYLRWLRNGGFEPNRKNRTNAQAYLKKYYTMGPWGSYSFAQMSQAVKATTGKSIP

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