NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302233_10005805

Scaffold Ga0302233_10005805


Overview

Basic Information
Taxon OID3300028746 Open in IMG/M
Scaffold IDGa0302233_10005805 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6540
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011999Metagenome / Metatranscriptome284Y
F049989Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0302233_1000580510F011999AGGMKNSLDAAMQGIEGLINSDGSGMIDQIPATAVIVLAGGTPAAQTASITPVNIAVAFTDQQVVKFYSTGGVQRVGGATTATISYSDGPSNTLFFSTALPTDVVATDYIVVNGATYGSGNSILGIKAWDVNSNTGTIGGLNRNAYPGRLSTPTINLGGAAITPGIAQRAEVLLGRALGPDADSIKSGIWYGPPEQAFAQSNLMYNVQIANAQEIKGDKTLDMSKKYFSDTFGGRKYHKSWTATASRMDLLVMENWYIGELSPLELYDFGGGNVVAPVPDIGTAGGSYLTSHRL
Ga0302233_100058053F049989AGGAGMSSPTDAYQQYQAPEWFSEELRRIGGENPYGDPVYIVRWGQGGQDECLYRAGGHWNIPVSYRGYRYLLLGGGTPSWMLLQWQPAVNFGTPESFYVAGLDEESNLQTIGEYPYFGKYVMLYNLCWRDMQNGQLKIEGMPLNSQILDLVVPIIEQSRDISWEKTKAALKELQEKEDAADLSMVEDAMRDASLAFKGPSSYARQGCRTWHIDKKVEAMNRNWNRMVNNARTLGRGLSSYSENPTQ
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