Scaffold Ga0302294_10003017

Overview

Basic Information

• Taxon OID: 3300028740
• Scaffold ID: Ga0302294_10003017
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4467
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001769	Metagenome / Metatranscriptome	637	Y
F037540	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302294_100030171	F037540	AGGAG	MTGPFKTGLAGQYLRSFVRTFSYLSCVLVPAAIAAVATMFAWVGFGLIFNCTHSAPFGIYREISDPAGTPRNPAPYVFF
Ga0302294_100030175	F001769	N/A	RHLKELGLSKPYAGDRWLVRPDFVPQLQQMKDIQDRARTLFRSGVAISDPHAPMEYSTFSKKLIGRVLLNSEDERTGALQTIFETTEGKIEIIRHDATLRAAWARGDLEPGNVVTIDSLRSDPEKLYASTAGKDTDILRDGKALDSIVRRMRAMNLVVGESDKGWMGEFNKTLRSRMMDRTRDRGF