Scaffold Ga0272446_1056317

Overview

Basic Information

• Taxon OID: 3300028735
• Scaffold ID: Ga0272446_1056317
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-006-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5772
  • Long. (^o): -110.7892

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272446_10563172	F002970	GGAG	MSYSTVADIVELLAGLAVQYNSVVVPVQRLASQANWSDAAQLPVRVIPILGGLRLTEGGVYTPARATKAVWEIDDLLLVRDVGMGRGVADTAEALAAYVEDYVAQLRFAWLARGDVQLLNVSGIVDVVKYGERAYEGVAMTTRFAHLVRAPSM
Ga0272446_10563173	F005302	AGGGGG	MAHSGVIAGLYAGNFAVEISTNGTTWTAVSDANVKVDDVEQTRPSGEAYVGGSSDYATVTIGKREPVEITLTFLYNEATGSAATTVFDRFQSATPTLGVRWSPRGLVGSARAYATSNDGAATGLGVITGVTLSALDPSAADPYVAMVTVRTPAVRQYALGTNPTDLS
Ga0272446_10563174	F004791	GGAGG	MSKPAEIYDIEAISVDRSALTIREAANVLNNELTPPVVARLVRKAIGAQADQFPLRALKRVYERVLPKVFEPDETVRSRAAGLTPAIGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAAQLLKKIFDSIGDEGNE