Scaffold Ga0302301_1000079

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000079
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94844
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000218	Metagenome / Metatranscriptome	1552	Y
F078987	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_100007923	F000042	AGG	MKNTKFLVKVNRGGARAAEYVLRVDRTPIQTTTNKKLALAMGRFTAEDAVKLMQNSRCTPELISVFC
Ga0302301_100007956	F078987	AGGAGG	MTRINLFRTAPSKNSVAWGKANSAKANSTNTIFNPTTSTLIFAALLLVCSLAVGCSNDQPKPISSTNQSPVIPTPPMTTTPTPAAATPVQQAVVKPVHKKVVHRVPPTVSYVNGDTGVSFDYPRKYALKTGDAANELVSSGPVPMDFIQPGGVALAAVALPESAYPNSDLASAYFNVSVNRTLTADQCSQFSVPQANPAVPTDPNIQAVAQLATPPLSKLMIGDMELDSAEANSTGDGNTGTREQASKYYHVFQNGACYEFALKVATTKLDTATTTKPSPNHINRNEVFHRLEQILATVKINPITPPEVNADAKTGTQPTPAETPAQ
Ga0302301_100007962	F000218	AGGAG	MNRIIDSIFGLGGLLVPIVAILVGGAISITAMVIRHQERIAKIERGMDPDAPPRS