Scaffold Ga0302301_1000043

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000043
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149828
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F003398	Metagenome / Metatranscriptome	489	Y
F004095	Metagenome / Metatranscriptome	453	Y
F014407	Metagenome / Metatranscriptome	263	Y
F016510	Metagenome / Metatranscriptome	246	Y
F075408	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_1000043110	F016510	AGGA	VIVKAKELTLKQMLSVPCNICGAAIGEVCELHTGAPRTEPHRDRKLSAAEAVEKETGKR
Ga0302301_1000043143	F002101	AGGAG	VTDSPVTLPILTASGDMAKKKRVLLLDTSQIKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLINASSEVESRDKFCTDMRGANPPQRIAFFVGGPEYLAAAPHSDADPAQTDANALHQELVAALLAQRTENISQRWGILEACKRISSVRSVSEARSRAIRETPQPSRWAEAIERHSEPEPLDRQPAFAATIAVQREELL
Ga0302301_1000043144	F004095	AGGAG	MSGINGDKARFNRRRRHKISRRVSNQKMLKTLAEKHLVPAGSQTNQKEKVA
Ga0302301_1000043145	F003337	GGA	VCKFSLVMTVSASRSFISWMLILLFPLSLLAADTGSAIVRGSGGIWVNGNEVADSIAIFPGDLVETKPGFIANLDAEGSSVLIEGESYVKFQGNFLVLEHGSVSVGTSTEFSVHVNCMKVDPLSNERTQYDVTDVNGTVQVAAHKNDVRIRRTATIKKPTSQAGSSENGIVHEGQQASREESAVCGAAAPEEAGHSLNTKWLKIGGGVGGGALVLCLLLCKGKPPSNVSPWQP
Ga0302301_100004373	F003398	N/A	MVTSNLETLSTSEMCAQVKHLGYAASGHIRLYGQDFEVVSDPFPEDDGIAVRVKTKSNSTVRVLQLPATVVQSVKRRPAKAA
Ga0302301_100004381	F014407	GGAGG	MRKGFLLSLIVLSAVAAAFGQDTNFSTGPQYLMTHGSTMFAQPISTPSLSLAGPPLQVGATGATGDLAVGAENQTVTVQPADALPPVNFFSFYYGAPYVIEISFNEESSSRRELPASILDPGVWQITTPQALRERGFGVTLPEAAAYGKSHPRHSTHVYTNADIDRVHGGS
Ga0302301_100004382	F075408	GGA	MAGLDLPEWRKFVCSVMIVLIPSSLLAQGSDRALLHSDGGTWLNGNPAPDTSAIFRDNLIQTQKAHSARIDAEGSSVIVQPETVVQYEGDELMLDHGSLQLSTASQMKVRVDCITVIPVTADRTQYDVTDVDGKVKVSAFKNDVKIHYAGGNLRKSKQNGSSDVIVHEGEHATRDEHCGAPIKPSSGLDADGPILNSPWARGAGLAAVAVITCYALCRSTTPVSPWKP