Scaffold Ga0302301

Basic Information
Taxon OID	3300028731 Open in IMG/M
Scaffold ID	Ga0302301_1000017 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028731 Open in IMG/M

Scaffold ID

Ga0302301_1000017 Open in IMG/M

Source Dataset Name

Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	226697
Total Scaffold Genes	180 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	136 (75.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

226697

Total Scaffold Genes

180 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

136 (75.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Abisko, Stordalen Mire

Coordinates

Lat. (^o)

68.3535

Long. (^o)

19.0473

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000378	Metagenome / Metatranscriptome	1211	Y
F005153	Metagenome / Metatranscriptome	410	Y
F005887	Metagenome / Metatranscriptome	387	Y
F008092	Metagenome / Metatranscriptome	339	Y
F018412	Metagenome / Metatranscriptome	235	Y
F050621	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_1000017131	F005153	GAGG	MQDFYIRYRNAQGALMRILNAASRRALDLPSVHAEPAGHDHAVTLQLEASHKQVGQLCREWYSIVDVIEVRSSAALHQNGQQEWEPIPPASARAAGESARAALA
Ga0302301_1000017155	F000378	GGAGG	MEDRAPGVSVSQESFPTPSTSGRQREGRGAWVLTAYGISGLALFGILAYYFSDFIAH
Ga0302301_1000017174	F050621	N/A	MPTDGRNPIQTLFTFLITLQFVVIVLHDLVDIPGWTQGSQVESIVGRGKLWMATLVNAIFPGVAVAFAVRFWDKPKPKFASDYWLLYCAVTLASAIVMWYIPYLFGATDKRKREFLQMYANTRQLLPPRGDNPRPNLLHICFHILFVINLSLALAPRFGNT
Ga0302301_100001787	F008092	AGGAG	MSTPSTTIITNLKTVTSPTANTLKSAGGEGIDMPGMLALAYSKAAELKVCLTLIVRSTDAADPNLTAFNNILASLT
Ga0302301_100001788	F005887	GGGGG	MGISDREFALKALDIEFQREVLDKLVRLETKMDTLVGNGQPGRMKLAEDKLAALERNDLRNSVHNRLVNGAVSAGISVAIALHKYWLK
Ga0302301_100001790	F018412	AGGAG	MSSAINPEAAEPSGTQAFEQSDRNPQVTNWNGTDSEGGQVPTPTASESRVTQPGPAPSANAGLVNYDVGDSAEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0302301_1000017

Overview

Ecosystem & Geography

Associated Families

Sequences