Scaffold Ga0302301_1000005

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000005
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 383086
• Total Scaffold Genes: 357
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 270 (75.63%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000901	Metagenome / Metatranscriptome	844	Y
F001772	Metagenome / Metatranscriptome	637	Y
F008825	Metagenome / Metatranscriptome	327	Y
F017033	Metagenome / Metatranscriptome	243	Y
F034255	Metagenome / Metatranscriptome	175	Y
F041928	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_1000005136	F001772	AGG	MQRKITLVLGGAVLLLAGYFYGNYKTTVAYAYSPTQGTVPKSYGRLSAVIPDQIGTGLIFEDAEGIIRFVSMTGMKEGELARYDQTPTHGGIPKSYGHLVGAVVNPTGTGLVFEDASGVIRFVTITGKEEGELVRN
Ga0302301_1000005144	F041928	N/A	MNAQSLDEQRMRQQGDQDSYAKSMPPQHQPERTEAAPATVLVFRDQHRQEIQNYAIVGHTLWNFSPQRTEKISLSDLDLPATTKANDDRGVSFRLPGANEGQ
Ga0302301_1000005167	F000901	GGAG	MALNKAAAYGMYSHDVALNEVVHTLNQAGFDNEDICMMLSPTHPIAGRVRDASLFNSECEANAVTAALIGWLSGFGAVLIPGVGFFIKSQVFFHALMVSREAPAICGNAKTLVGLGFSDDEADRFEGQLRQVGVLVYISCPDGAKTTWAREVLRHTGARESATLDERMAATAAA
Ga0302301_1000005185	F034255	AGGAG	MKSIRKFAYAAVLTLTALNLAPSLASAQDEGGRFTLPHEVNWQNAVVPAGDYRFSLQPMGPSEMLTLTRTSGKPASFMLYAKDVDVDTGSETARLVIQKSKSGTSYVSAMDLPQFEVTLHFAAPANSGKEVAEMRTASAATSAR
Ga0302301_100000526	F008825	GGAG	MNCVELQQSLAEVEDGSAPEQSTHLQTCRACAEMLEELNLIVARASELQACDEPSPRVWNSIEIALRQEGLIRPQPSPRPSTLPSFAARWGSARWLVPAAAMLLLLVGVYERSRSLPERSLQRAVVVAPVANPSGLNDDDFIQEVAANPSMQNQYEENLRRVNDSIRDAQSAVNENPEDPEVRRALMDAYQQKSMLFEMAMDQSMQ
Ga0302301_10000053	F017033	GGAG	MAGLATITLLSPGTLLDRLWVLNPIAYKRLAPLGSTVGILFLLLGAALTTAGVGWFRRRLWGWRLAVVIIATQVVGDVVNCVRGDLLRGGTGVIIAGALLLFLLQPKIRATFA