Scaffold Ga0302301_1000003

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000003
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 572808
• Total Scaffold Genes: 514
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 414 (80.54%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F000655	Metagenome / Metatranscriptome	958	Y
F001701	Metagenome / Metatranscriptome	649	Y
F006705	Metagenome / Metatranscriptome	366	Y
F008017	Metagenome / Metatranscriptome	340	Y
F011166	Metagenome / Metatranscriptome	294	Y
F013787	Metagenome / Metatranscriptome	268	Y
F016010	Metagenome / Metatranscriptome	250	N
F044602	Metagenome / Metatranscriptome	154	Y
F047440	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_1000003125	F000036	GGA	MAYKEIFWMACDSTEQLRAEYGPFHTRAEAEAEAHKLGFTYLLRYEHLLDENEEILEVRCIFLELPGAAAAQVSAISLHTRCATCGESATHDTAWRAEVWADIHEFEHSRHLVRLFEHARGKGLKEIGGWRG
Ga0302301_1000003203	F047440	GGAGG	MENYADLMQRLLEIQNGERRNPKLIEEDERLMRSLQERSLAGKPAQKLEASEQ
Ga0302301_1000003229	F006705	GAG	MPYILEHLTSLRQEITDLRNMNARHPGKGSDHQIDQSAVEMRANRLAEIKKELSQMLNRPDDPKVWWEKGGRRDRVA
Ga0302301_1000003282	F016010	GGAGG	MNKHIVQLIRERFHPLVRFCGPQSAGEVEIERVRATVYLGELSIWLWPAKSSHNGVLSDEQLGDVVSPHLLVRNLLLSAQTSMQCLLCHLDRIEAADGDTVSLLRYYLEDSAATVVDGMALGRILGPRAGETAQ
Ga0302301_1000003304	F000323	GAGG	MKKTILVVLAIWASVLLAQESNVPSVPSRDGSKHAKGLITVQGCVGRYTGDYILTKQDPGMTYELQATGKIKLRHYLGKRMEVTGNESPSMSTSSDTSARMGSPAPVTLTIISIKTISNRMHRTPNLRLTYSLSES
Ga0302301_1000003333	F008017	GGAGG	VKADAATQTSVGQALTKGACPICGILKDFQWTLAAIVRPQAALRLCNFHTWALARSRGGSLERSTPGESVSSVFLEMLKGSPAGKVSSDDCALCHRVLEEEVTRLRELAQQFQRPMFVQWMKTQGSLCVDHAGKLKEFVPLRLRTLIDGVVERNRSELREELEAFHEQLKQGVHTGGGLLGRVAEFLVGQRGL
Ga0302301_1000003362	F044602	GAGG	MRRFALAVALLSPLTLVAGKNPADYPLRIQVIESHWNRPLNNVDRRFGGVDGWGRGNIKDGDSLHGFDFSYSAAEPFHRTVGGGRYLAKWKKEGTRMELIVGEIGAPDKFLTFDLKTTVRDDVYVRGQDGAVAISQEEFKARAKDKNNEKDKDTDSDKQ
Ga0302301_1000003379	F011166	GGGGG	VKKIISIWKAGFAWGRGLHREAALDSLRNVLAVVGGATILADFGTIKLWLIAPMLAVAFLIWYLDYDRHFRGETAEEAKLTR
Ga0302301_100000347	F013787	GGAGG	MSAITDTEFLRLLKKDIDYFRQALQRFENLIPNVCAPVQDQWRLQAQARKNFTLDLEILLDKAEHCVELSLQDVNNKGLESASC
Ga0302301_10000036	F001701	GGAG	MNSVKFLWAAYIATWVIHGVYLGGIVRRYGRLVQRMKDLRK
Ga0302301_100000365	F000655	N/A	MIWWFLILGVSTLVVVCVAIALYMRLRRHLQGAQAAQEGTSSAVERVPGSDEP