Scaffold Ga0302301_1000002

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000002
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 583058
• Total Scaffold Genes: 533
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 411 (77.11%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000612	Metagenome / Metatranscriptome	985	Y
F001759	Metagenome / Metatranscriptome	640	Y
F002320	Metagenome / Metatranscriptome	571	Y
F002337	Metagenome / Metatranscriptome	569	Y
F003631	Metagenome / Metatranscriptome	476	Y
F006802	Metagenome / Metatranscriptome	364	Y
F016697	Metagenome	245	Y
F017861	Metagenome / Metatranscriptome	238	Y
F018974	Metagenome / Metatranscriptome	232	Y
F044613	Metagenome / Metatranscriptome	154	Y
F055107	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_10000021	F002320	GAGG	MPRSVKIAPEIDAKLYEELVSVAKENGQSQRFVLERALEHYLHNVVPSQQLVRPEVMAAYRRSNEKYRELYTRLSVPLET
Ga0302301_1000002109	F003631	N/A	MELLLNLAWMLMALPAYWLWRRGAGARRERRVSALECLLALGCVLVLLFPVISATDDLHAMRSEMEESSTSKRTVRQASGDKHVAWVNRLQGPPALVARVEWQPDPLAERLEISGLRLAVLARPCDWHAGRAPPSSLLG
Ga0302301_1000002227	F044613	N/A	MELRLQPEKEAQLAQIAAQKGLDPDELARQVLSRYLEDDTHFIEAVNIGLAAAERGDFVEHEEVGKKLKQILRP
Ga0302301_1000002236	F006802	N/A	MPLILCVTVIFSVGIGVVTAYAAVIGILQACGRASQQLPSEARPRLVLVPTQNHAGGD
Ga0302301_1000002267	F055107	GGCGG	MAGTQLIAIRLVIGGGLIRRLRPGAKDITAQAVGATR
Ga0302301_1000002268	F018974	AGAAG	MATKLSSQTRSSNRDRGTQLKTFLTAVMSLLSVLVLALGGWQRNVFWLWIGFVSALISGVFIQLFINGIKNDVAAGRR
Ga0302301_1000002449	F000612	N/A	MTFSAGGKTATLQMKDLPIIDQPRWPAMDAETTPALLDFKLVFQSTGEAVKYEDPMRQYRFEGFKAAAQLEAVVRVPSIAFTFKTDPLDTSRCDFAVMGAEVNGKYYS
Ga0302301_1000002509	F016697	GGAG	MKCGNVCLRYRAGVIALVCLLGLGRPMVGAAQDSGEGARVPIGPGTTIVHSKFGGQIFGFDVDQNGTEGVLTEDKLLANGNVLAAIETFDQKTGKILKVVSATENQDNFLTLGIEGTSVGLVEQEIVTGIFVTDRIYDVMNPLASNAISGTWTPPLTSDDIIIGISRNQASTTSAVLYFENDGNNFSSFVFGTNVGANTFQPVVNLTNPIFGFNEAPQVAYDSVTNQAVVATSNGEVGGPPPVFALVDLTTGVVNTFNGIPGPPPFRQGSINGLAVDSEDGIACTTTEVDFRVEFYNLKMQTGFAVTLPGAVSQIQSGSDVEYDPIHKLFFVAQSVSSTAAGSSIQVYNTKGKLVESLNGFNFSNASNVVFTHIALNPSTRSGYVDGPDSGVTEIQSFTY
Ga0302301_100000255	F002337	GGAG	MNLAIVLVVAAAVALGVILRLALSQSLQVKQSSSLANTIRPIDVEAFRNLSNSAEDYYLRQRLPGAEFRMVRRARLRAMAGYLQAAAGNAAVLVRVGEAALATGDPRVAEAARELVDQALLLRRNTTLALARIYVALAWPYSTFAAVRVIDRYEQVSGSAMLLGRLQNPGAAVRLSAHG
Ga0302301_100000258	F001759	N/A	MTLKSALQDLRETTLAAVAGLLAKLAYLGSLRRREGGYMHWGLSLVYGEESSDRALKTAHTEVLSKVLRTPISDLEDDLHESSQTVQEAPGTYIAGMQEHFTQLLPSPQDAVSAGHLNSVLVALSALEKNRKAATPSAS
Ga0302301_100000268	F017861	AGGAG	MSNKGKSTLVESALVLALMGILAGAVGGLAIGVVTAPKTTSTTSTSH