Scaffold Ga0257115_1000307

Overview

Basic Information

• Taxon OID: 3300028706
• Scaffold ID: Ga0257115_1000307
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48166
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (83.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008114	Metagenome	339	Y
F037990	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257115_100030725	F006728	AGG	MTKLDFNNIVVRHNGRTISIAQHWSRTSEGDFINAQEIADIDDLHHCEDYDPIRFDDTVDGLINALQAIKKDIEQ
Ga0257115_100030726	F037990	AGAAGG	MKFDKPTARKIREAMQEALENAGIHGVTINVGNCSFTDGEATYKVKVLIDGAKSRDEQDLEQMASLMGFDTSKIALLQGMRVSLVSYNSRARKRPWVVQDLTTTQKYIIDDDTAKRLFGAEEKVS
Ga0257115_100030728	F008114	AGGA	MNLTINTKAFPDADPGMLQEMLGILPYWVREYNLLGEDMDIVGFMTERYGFGSLYQFKGDVQDDGTYSYPEDPDLPYIGKMNTPNGNVYFYEYAMLALPLPSGEYFVTRMD