Scaffold Ga0302165_10004528

Overview

Basic Information

• Taxon OID: 3300028678
• Scaffold ID: Ga0302165_10004528
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4310
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051308	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302165_100045284	F051308	AGG	MTARRLNRIWRPQPALLALLWVLVSAGMAVAQCPVTNPEDDLPPPLPTVTSSTRTGEPQLPESGYLAEKSYASTYFGFVIGLPIALNGHRVMLPLMPPGQHALLGIGFQEGRRSGTFLITASEPSNPMHEMSEDERKAEFQAWGKGNPSRQITAPDWLTRTGHFYHISKHSGDVTTLQYWTFIKNYLIRVKVTSNDAAFLRRSKEAITGVKFYCAQEDGALINEQGSLVPTRGEGYQGPTIPTSVVDNALSEKPALELIERGETSKGTYENQEMGLSYRYPTTWESGGSDSPPLAKDEIVQRTHDVLDACSLVLLRLQPAGTGDTARGENQITLRAVDQTCLGLPAPMSASDHLGAEELGAYLQMLGAFGEVRSHRLVLRGDKLFAEYSGVAGEHDEGESLGHRRAEAMAVTRHRKLLLVWMWTAPSPAELAAMPTTTVSFGDAPPIELNPAVVAGKK