Scaffold Ga0272445_1019309

Overview

Basic Information

• Taxon OID: 3300028675
• Scaffold ID: Ga0272445_1019309
• Source Dataset Name: Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2466
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5775
  • Long. (^o): -110.7896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F088087	Metagenome	109	N
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272445_10193091	F069506	GGAGG	MQLEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFIHVAGTVVDYEDIVRLVTKLL
Ga0272445_10193092	F100012	AGGAGG	MVMDREKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWTHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFAKDPVYSWESRISFSARIRSADDAVDAVMSLAELIEQNLKSRAVE
Ga0272445_10193094	F080678	GGAGG	MFVKKVDARTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRSVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0272445_10193095	F088087	AGGTGG	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFIKGGGE