NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272445_1009805

Scaffold Ga0272445_1009805


Overview

Basic Information
Taxon OID3300028675 Open in IMG/M
Scaffold IDGa0272445_1009805 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4212
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5775Long. (o)-110.7896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F104114Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272445_10098052F069506GGAGGMRLEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPRTQKCLTYREYTSDGVNVHRFINVAGTVVNYEDIVRLVIKLLDQIQSALAAA
Ga0272445_10098053F086364AGGAGGMEREKIVAVLEGAFAEISGAEYEDEPTTFAQFLESFRKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDVLKDEWSYTGEFSFICVDPEILKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA
Ga0272445_10098057F104114AGGAGGMERLRLWLSLTQDEKFTAAERELKGAIVARYDESADEWSLVRSVEDIAPSALAEIVIQTVEALLGLQWRLEWDYDADADDMVLGSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK

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