Scaffold Ga0272445_1002622

Overview

Basic Information

• Taxon OID: 3300028675
• Scaffold ID: Ga0272445_1002622
• Source Dataset Name: Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12166
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5775
  • Long. (^o): -110.7896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272445_100262210	F069506	GGAGG	MQLEQLTYTEEQIKQAIEEVWQELLQEADAEDYSLEEYLKHYRKYWDDPDFPNDIPEIIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVIDYEDIIRLVIKLLDQIQSALADA
Ga0272445_100262211	F100012	GGAGG	MDREKVLQALREAQAEYNIKDLDNFIRTAWEEGDVLQAQFVAEIVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVTRLAELIEQNLKSRAVE
Ga0272445_100262214	F080678	GGAGG	MFTRKVDAKTTPIAEVYDDWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKFGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHADV
Ga0272445_100262215	F088087	GAGG	MLTASDGSVWTPVTVSSAPCEICKRKCKSVVYECVEGKWAGVRVVACPEHVEKAIEQFIAGGEE
Ga0272445_100262220	F092976	GGAGG	MMVQEILNFKQELRRVSQEFLRKWKKCPKCGARWIDAAWDAESDHEWLIVECRNGHLFRADEEFWLFDYSGRDCESGVYVPSEDCEMEVSGYAG
Ga0272445_10026225	F104114	AGGAGG	MERLRLWLSMTQDEKFAAAEKELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDLDADVEDMFLSKGVTTYWFRVFDPETGCILTRKPNGIPGARFRYCKFIETLGDAVRAVVDLADIIAENLPVVRSQVSLIKEVK
Ga0272445_10026229	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAEHSNGSCTVSVVFPILSIDDAVQAVEYLLRSVQQA