Scaffold Ga0257175_1038075

Overview

Basic Information

• Taxon OID: 3300028673
• Scaffold ID: Ga0257175_1038075
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 856
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000440	Metagenome / Metatranscriptome	1137	Y
F017513	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257175_10380752	F000440	GGAG	MRMQTKCTPAQRAAECLKRVAALTGAEQVHGDSYWLRAGRRHFLVDSKFVRVISSRGESTCFSVAADPDMPGAEAVASALLQLKNNPRLFEKWRELQGYTFKANGKMFRNKYLLNRDDT
Ga0257175_10380753	F017513	N/A	TRMGNCYVLDVGTTRFHVRDRYVGRTRDVTDPECAYEETCFYSAHKEMPKSEHIATALLQLANNPALFDKWAAQSGAFKADGQAFSPAE