NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257175_1013883

Scaffold Ga0257175_1013883


Overview

Basic Information
Taxon OID3300028673 Open in IMG/M
Scaffold IDGa0257175_1013883 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1264
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075919Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0257175_10138831F075919N/ACKWGPPLAGVYLSSRLRLIDRCRMVSGTVDCLKLEPDGDYHVRLRVDDQYAALLKPANELQTCTGHTGPHLVVEIIPQHPQGILFRTNNADAGGFINPRAPAPGDHITVTGPYVIDTNSLHRILYQGRAAENWAEIHPAWGIRVDKPSTPGTPNDYGPEFGE

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