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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028666 Open in IMG/M |
| Scaffold ID | Ga0265336_10000028 Open in IMG/M |
| Source Dataset Name | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 179201 |
| Total Scaffold Genes | 171 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 121 (70.76%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Seattle, Washington | |||||||
| Coordinates | Lat. (o) | 47.6516 | Long. (o) | -122.3045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023378 | Metagenome / Metatranscriptome | 210 | Y |
| F034241 | Metagenome / Metatranscriptome | 175 | Y |
| F039453 | Metagenome / Metatranscriptome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265336_10000028132 | F023378 | GGTGG | MTKTYVVSGSGMKFDAALWPVPANVEIHFYFACMREPQFYKTRTILDKLMLEVGMFPDRVAMPGEMIPSHFCWAHPDERTPSGVFRRQTGQLAMDLAGSDPSHPVALSHVVKALSADRGRSTTAIHWIVREEDGPPDLANLDCLYPVRLRNGTLDDNEESHHVPLGETPLHAAEASPLSEAGVGPGPLAQWPGVRRRANTR |
| Ga0265336_1000002864 | F039453 | N/A | MPATLTALRADAIRLTHDDVPYEPLASDAALGALLFALDLLGRDAVDVAAMRYADRLALGPALDAARQYGLILARHVERADRATPRLPASVRVDDVHGWVHAAAAAVPEVERDRFCWRLARRLGADPWCDGRPAIALANQQFGMFEEGFEEIEAGAAQAQAAADAEPGATPAP |
| Ga0265336_1000002869 | F034241 | GGA | MSQARPRQYLGALRAALTAAKAANTVRAAAYHVLPQGVSCKMDWAGWSDPWYDATPRQQALLDVLQDLLDGGETEAPMIALKTALRLEVPESEILRSQDNVGPDGEPGYFFDDVLHGLYALDAQHTEQVFYGLIDRLMQPGCVRAGLIAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |