Scaffold Ga0309993_1488

Overview

Basic Information

• Taxon OID: 3300028663
• Scaffold ID: Ga0309993_1488
• Source Dataset Name: Enriched hypersaline water microbial communities from Club Lake, Antarctica - Round 1 Nha-Ce
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Garvan Institute of Medical Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44902
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (75.68%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Antarctic Nanohaloarchaea

Source Dataset Sampling Location

• Location Name: Club Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5417
  • Long. (^o): 78.2467

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055308	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0309993_148857	F055308	N/A	VLEGVQYEMPQTIDSSTESKWVREFWMKGTESTSYATTHGMSDVVDASNTEEKIYGPSDGMDRGGGVRYYDGGGWVSIYSGISPGDWVWIHEEIDFPNSQTYTEVKDAPDGSVLGSGTVGFRNSTNQLSYKIIHANGVTSGEDLFRSVRGRPPNPPFPWG