Scaffold Ga0265323_10041611

Overview

Basic Information

• Taxon OID: 3300028653
• Scaffold ID: Ga0265323_10041611
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002448	Metagenome / Metatranscriptome	558	Y
F007212	Metagenome / Metatranscriptome	355	Y
F010139	Metagenome / Metatranscriptome	308	Y
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265323_100416111	F070324	AGGAGG	MANISELLNGWGFGKQTAIGTANTLATIWRHTNLNTRPWAK
Ga0265323_100416112	F010139	GGA	MDMADLIHMASPEGEVREVEATAEALSPLMSNGWIQVPAPVAAQKPVVVAEEAK
Ga0265323_100416113	F002448	GAG	VINPKTILAEWVTALQALPNLVDALGGDGGRIQFYTENAIVFGQPTQNNIRLAILSMPPGSVMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGSSLRMLHTPVDPNCEPMDFYLPSARRNTVVISQDGATFEYFEVPVRLIESYNP
Ga0265323_100416114	F007212	N/A	MSDWPTIDAAANAAMQQTFGEPVVYQSAQAGLAVGDAVTIAAIRHARVREESGAPANIEEISVNPSDLANFPQRGDWVTAWGSEFVVTTVRQPDPYGMVELSLMARAGQSSSD