Scaffold Ga0302249_1026648

Overview

Basic Information

• Taxon OID: 3300028628
• Scaffold ID: Ga0302249_1026648
• Source Dataset Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Val
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1621
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058970	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302249_10266482	F058970	AGGGGG	MATITDAGLEYFAKFFNYDRATEVFETDAIINKIRIGSGITAEAVTDTDLANKYTDLGFEEATATTIEYLNTTEHPVTLHLQKVFTNGATVNREVWECGAFSSGGDCICRHVFQPYELENNNIVPIGQTITIDIYIRTDADPDVEYTKTIIDSDTTEYKLDASVIVSATVGTEAIDPSAFTCEREKICYNGVVLPNASPPAVTEARGGKTWVIKCATQTYADVTKLVNKQGLVNVGVSVTGYQYATSLQRYGTLKIWDKTAKTHTAYSNCLIAGPVNVETFGS