Scaffold Ga0302249_1005258

Overview

Basic Information

• Taxon OID: 3300028628
• Scaffold ID: Ga0302249_1005258
• Source Dataset Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Val
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5643
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042353	Metagenome / Metatranscriptome	158	Y
F054061	Metagenome / Metatranscriptome	140	Y
F072352	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302249_10052581	F054061	AGG	MDEMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNVDWEGLLRLHEVIHDRIALEGRV
Ga0302249_100525810	F072352	GAGG	MNPPKTAFSDVKRARTVYTLPECPNGCGEMLALDDGWQCPICYRYLGYRRGEQHP
Ga0302249_10052582	F042353	GAGG	METRTPPTTLTGDACRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLDVSAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELDDLVRVWHPEPDTVEEAR