 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028627 Open in IMG/M |
| Scaffold ID | Ga0302243_1007600 Open in IMG/M |
| Source Dataset Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Met |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4236 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037746 | Metagenome / Metatranscriptome | 167 | N |
| F070633 | Metagenome / Metatranscriptome | 123 | N |
| F074119 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302243_10076004 | F070633 | GGGGG | MGLRDRAKNRLVLDVSHSQGDEGFVYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG |
| Ga0302243_10076006 | F037746 | GGAGG | MSVDIEWAKASDTVGQEFESNYIPGTTDKDLEDARALMQKLLKKYGSRDALEADERDWAKYRKAMYVVASRSKDTMDRANKAREELIKRKNQLSQFFDDNREILFKLPEWARINLRKYTDYGLLVDQEYLWQALGELGEDGLVEHLLNVANYIYLDTGFLGGTREDYDALQKGPVRSIYHSPTCKSQKTVHPDCGSGCNKV |
| Ga0302243_10076008 | F074119 | GAGG | MSEIQVFEVLAKILPYLVTLGIGAFAGWELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFQWSFVAKKGEL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |