Scaffold Ga0302251_1000521

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302251_1000521

Scaffold Ga0302251_1000521

Overview

Basic Information
Taxon OID	3300028625 Open in IMG/M
Scaffold ID	Ga0302251_1000521 Open in IMG/M
Source Dataset Name	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Gln
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34332
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (93.18%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069433	Metagenome / Metatranscriptome	124	N
F072819	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302251_100052115	F069433	GGA	MAHKLPPKQCSSNTPAWTDPVLTDLTTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELGACKSGRGESGYCPQDSSGCMDFTDPTITAMSTEVRGIHFRQMMQKAQVLMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWICASINLPSAAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGACEYSGGHDHSAWNCKCNPYS
Ga0302251_100052116	F072819	N/A	VTGMFQDQTKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDVLCEVYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVVLNDTHREIFRDKLGLDIEEIEPGLSKLAWRIDAGI

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