Scaffold Ga0302246_1014920

Overview

Basic Information

• Taxon OID: 3300028624
• Scaffold ID: Ga0302246_1014920
• Source Dataset Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F034940	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302246_10149203	F034940	GAGG	MGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEAWRRCGFAIGQHEIPAGNEG
Ga0302246_10149207	F004383	GGAG	MTDILERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYERSEGSE
Ga0302246_10149208	F003987	GGAGG	MIPALPCGTFSDSNTPAGAFYVAAFEEGDTPHHVGEYRIETVIRALEALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFDDRQLGCIAVAPVGVE