Scaffold Ga0302246_1014458

Overview

Basic Information

• Taxon OID: 3300028624
• Scaffold ID: Ga0302246_1014458
• Source Dataset Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2671
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015605	Metagenome / Metatranscriptome	253	N
F051104	Metagenome / Metatranscriptome	144	Y
F078674	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302246_10144581	F051104	N/A	KAIEEEAKLSQELIKEGFSHAFKAGELIQEVKNMLNSEEALWEWLEGNCSEVEKSALNNYLKLFNGETIKVEATLKQ
Ga0302246_10144584	F078674	GGAGG	MDALKKAIENRRAPFEVEGKAGGRVISLRVTEKMEQLLEEQAQEWNMSISDTLRGILNFYFLPPVLYEAWEKKVQELIDLDTEQKGENRADMSAPTHAQRIEPVFCDSEEAEEYANFIHELWDKNLRYWEILREEAVTANRIAVKQLTETAEALKRCKYALPERAEVEP
Ga0302246_10144586	F015605	AGGAG	MIDTLKVMLNEYEITDDSEVRIQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNIEPEEPFSCYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQSVYGLSRVEDIFRGGYQVIRE