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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028624 Open in IMG/M |
| Scaffold ID | Ga0302246_1005102 Open in IMG/M |
| Source Dataset Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6184 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F064748 | Metagenome / Metatranscriptome | 128 | Y |
| F078879 | Metagenome / Metatranscriptome | 116 | N |
| F092110 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302246_100510212 | F092110 | N/A | MSCKDYIDLKPGMEVKLSYEPWGYKNVDAVIDSVDVEYHYDEAHNCGVFQPVVVCYVGKYRMTFKGSINWETLVIKPCRKVQVKDLRVGDVIENSVWRGFVEKVFSDKYVGVQWFDKLNNPTSYYNYSSNEMIDVEVVGHIDLWNL |
| Ga0302246_100510218 | F064748 | AGG | MKKYCFVGNMEDVTPCGNMDADCIAAGCKGKVWGQCHFDPLLNLLSSGAEYFAEILTENVIRDTVFRVEKDGAYSKGGLYPLFSDNGKLWMESGHLKNHFKQRTAYNCETHTPIYLYQEYPEDAEVVEYALVEVKRTPVKKFVEGDE |
| Ga0302246_100510220 | F078879 | AGG | MTPDVSDEVKEGYDLLEGIGIVERTESGQYCPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEEMEKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |