NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302246_1003470

Scaffold Ga0302246_1003470


Overview

Basic Information
Taxon OID3300028624 Open in IMG/M
Scaffold IDGa0302246_1003470 Open in IMG/M
Source Dataset NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8472
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Thermotogae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F078757Metagenome / Metatranscriptome116N
F080087Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0302246_100347012F078757GGAGGMNRKAKTLPRRMVRPFLDSIRDVSLSTAERELIDVLSAVPKRAEAINLYDFGRKIRDEETEIVESAFYAVAKIKNRLPER
Ga0302246_10034702F080087N/AMEHATAWKTSETEYDVRVPARYREYTCAHRVVAIYRRYGIITDYQYRVSKKELEEIERIVETRIEQTNNKGGHK
Ga0302246_10034703F012026GGAGGMNLRELQATIANIIGQRAEAVDKLNRLMMIEDRFNPENITAINAYKQAIATLSEELTRHERERAELLAREEAARREYVAALNAYDEIYGRFPNAEKEAAELLKRYAKITDAAEKARSIVLEKMNALTAVAGGFLPIPPAPSHAWSTFAKEYAFEIEHRGGD
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