NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247819_10356949

Scaffold Ga0247819_10356949


Overview

Basic Information
Taxon OID3300028608 Open in IMG/M
Scaffold IDGa0247819_10356949 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024581Metagenome / Metatranscriptome205Y
F078143Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0247819_103569491F024581AGGAMRHSEHSPAIHNVEMPGLTPSLDHVESDPNRRSVALPLLLPGTLVTLHTRNTCYRLVVIDGSERRVQISGGKLFPENTDVELIGAIDDEGVKVGWIVQ
Ga0247819_103569492F078143AGGAGGMKVLGILLLVVGLVTAFASIAGLGQQAGNARENTAIVGDQNQPARDQATSLMLPIIAGLTIAAGGVLVGIGMGHFEDPKIVPPDSPQAEKAATTRGTTPSG

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