Scaffold Ga0265293_10284634

Overview

Basic Information

• Taxon OID: 3300028603
• Scaffold ID: Ga0265293_10284634
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1065
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071725	Metagenome	122	N
F072892	Metagenome	121	N
F076577	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265293_102846341	F071725	AGGAGG	MKTLLNEPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWQRKEINEVGLFHELEKLSKVESLPG
Ga0265293_102846342	F076577	AGGAGG	MNFWPKSKVIALMEIAFHFGAISYAPSNGKKRREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEINMNELCEGCEFFKKEVNNENPTQ
Ga0265293_102846343	F072892	GGAGG	MNINLLKTISTRLFGLYSQFKSVVSDLETNNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENELLAEK