NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265293_10284634

Scaffold Ga0265293_10284634


Overview

Basic Information
Taxon OID3300028603 Open in IMG/M
Scaffold IDGa0265293_10284634 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0265293_102846341F071725AGGAGGMKTLLNEPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIREKWQRKEINEVGLFHELEKLSKVESLPG
Ga0265293_102846342F076577AGGAGGMNFWPKSKVIALMEIAFHFGAISYAPSNGKKRREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEINMNELCEGCEFFKKEVNNENPTQ
Ga0265293_102846343F072892GGAGGMNINLLKTISTRLFGLYSQFKSVVSDLETNNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENELLAEK

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