Scaffold Ga0265293_10131187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265293_10131187

Scaffold Ga0265293_10131187

Overview

Basic Information
Taxon OID	3300028603 Open in IMG/M
Scaffold ID	Ga0265293_10131187 Open in IMG/M
Source Dataset Name	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1894
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Waterloo, Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091386	Metagenome	107	Y
F100335	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265293_101311873	F100335	GAGG	MSQLLDELRILIEDESEEDFEDEKLNIYLNKYRNTLDDYPLTAETDDYLVWKCPYKYLDNVILDSSNDTPVTDSYTSDDINGIYTFTEEQSAVYIKAQYYDLYKTASDIWLIRAAKATFSGNTRLGDETIPQDKYNKEYCIKKYWELRPSDSSEMERG
Ga0265293_101311874	F091386	GGA	MSIITSIRNQQENIINQNPASITITRETKVSDGAGGWITLDPEVLASQDIRIYSKRTRTLNIADGGWHTVRITKAVAKYNANVLKYSATNEDTFSYGGFTYRIFDVIDRY

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