NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0265293_10089819

Scaffold Ga0265293_10089819


Overview

Basic Information
Taxon OID3300028603 Open in IMG/M
Scaffold IDGa0265293_10089819 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2504
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F058173Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0265293_100898196F033445N/AMLWATPLLANDVCFSEPDASKMVVELERGRVCEQQVIQYEVSVKELSIQIESLKNQVDTMSKKFDETMKQLDTERKIADEKDKARLEEIKTAGRPQWTMLFGGFGAGALLVGALVLLL
Ga0265293_100898197F058173AGGAGMKMQYWIALGIGVAIIIIVAAFFWGRYHPAPDVIGRLTDQVRLETIKQYDQRIADLNSQLKVSQAAYIESQKRYDTIIKKIKELKDGKDNIKPPVDSIELNNRFNALGYTPTGK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.