Scaffold Ga0265293_10039407

Overview

Basic Information

• Taxon OID: 3300028603
• Scaffold ID: Ga0265293_10039407
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4625
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051165	Metagenome / Metatranscriptome	144	Y
F076128	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265293_100394073	F051165	N/A	MTTSFQKTLAVLASVASVLAGVVTIASYLSGEDVTLQPSSATPPSESRPIIIQARAVFVDDDKVYILDYDNNLIEWNESLDVEVL
Ga0265293_100394076	F076128	GGAGG	MLIEIIVLLFFLVASLYLAYQFRSCGYQMGILRGSNETLSSDLKKTREENLKLMSELQKTQADLALTRGELEKTRAALNSCTDAINGGF