Basic Information | |
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Taxon OID | 3300028603 Open in IMG/M |
Scaffold ID | Ga0265293_10019564 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7886 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Waterloo, Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F065813 | Metagenome / Metatranscriptome | 127 | N |
F073596 | Metagenome / Metatranscriptome | 120 | N |
F095526 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0265293_100195644 | F065813 | N/A | MILLMKFFGWLDVIIATPFAIYFGYKGIKWIIGKLKKQPQEGEIDTPDVES |
Ga0265293_100195645 | F073596 | N/A | MNVFEKIKVWFTSVSKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALSLAQPVQTKGQVIKAVKQDNKISANFQTAFFKEKAQNFNK |
Ga0265293_100195649 | F095526 | N/A | MEIKIGSNSIVRAIDYDSKLCLTLGAGGITIPLVALPSFEVDIFVENRETQKVHCTFDGATATNCTITTEGEITCYMPAYTFSVGGKLFIEVITHTPDTNFADGSYDESITIDTKYLMQ |
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