Scaffold Ga0265293_10013179

Overview

Basic Information

• Taxon OID: 3300028603
• Scaffold ID: Ga0265293_10013179
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10785
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F054066	Metagenome / Metatranscriptome	140	N
F054970	Metagenome / Metatranscriptome	139	Y
F079824	Metagenome / Metatranscriptome	115	N
F101228	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265293_100131791	F054970	N/A	ILDLYKNHECDKWKCEECPFHLKEVEEDPYYGKHTCGWLLLRSATRKIMRK
Ga0265293_1001317910	F101228	GAGG	MTEICEITNMVRDIWKWSAERWLYFTVIGIVYLLIYYASGSPIQAAFGILLLICMWLGILWVDRLPRDDQIFWKRLVGITVILLAITVAITFNPVSALTITGEPAGDQIHWEIADGEPPYTVFVNGVEIVSGYPGTVFTTDSEPGRQYTAVVLDNETVADATVTGEYYTYPMWVWLLFAALIGCLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAPYLRIFAGAAFIVGLAGIAGRLQ
Ga0265293_1001317914	F040648	N/A	MTENVIQILEVRHDIDVLLETARAGVTALETASTKIHIPTREMAKIQTAMRKMREAANYVENRAHNLSVKPDKITKTALKEALKDASQEQIERAYTILSGLDAAYETPEEDLDEGGAMTDKEAHYFIQVKGDDE
Ga0265293_1001317915	F036251	AGG	MSTKERQTVLFGDTGIVAPIDTTERIPLADGVVFVAQRIEVRPSSKYGEYVVFDGEDLDGKEFHAYSTSSVILQQAKALLEKYGGENGDLTHDVLCTVNAVVSATTGRRFYTLV
Ga0265293_100131796	F079824	GGAGG	MIYGFFGSIPGCPHSRGNHALRGNGKTLCLTFVGYVDALRGRRVISNYKTSFSEYVPVDEIARMVVEENIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFIPRKFHVDGGPCHKDRCKEKHIIYLFQHDPFLQKEVIRLNAEAFADLYNTDEIIAVPKRKSKRRKT
Ga0265293_100131797	F029451	GGAGG	MAVDLEDLIASTSSNAGQPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYGRYDNRVLTAICEGALSGRISLDGKSRDEIIRIFQAVGNTAQEESVGRGGGILGRFDY
Ga0265293_100131798	F054066	AGG	MFRTTRKAKELNRFRVGKGSPGLKAVLYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDGVGAFVMPNEEQMLRQLHDRYALYINYNINSSTPGQVTEELEPIAFKYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA