Basic Information | |
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Taxon OID | 3300028603 Open in IMG/M |
Scaffold ID | Ga0265293_10001478 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 51012 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (92.54%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Waterloo, Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034978 | Metagenome | 173 | Y |
F039402 | Metagenome / Metatranscriptome | 164 | Y |
F042954 | Metagenome / Metatranscriptome | 157 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265293_1000147818 | F042954 | GAGG | MEGVQTRDGLYGFEFREVDQRRVDPAERKRYEIKQLWQRSHEIINLAAQGWKNVDIAEILGITPECVSMTLNSELGQKKLSDIRLSRDEEAKKTSEKIRILTAKAIQTYHEIFDNESGEATLRDRKDVANTVLLELSGLRAPTKIQSVQTVLSAEELREFRERGLRAAKEAGATIDITEQPNAECSSLANPNSNFGPDLDSNAGSSLTIEE |
Ga0265293_1000147838 | F034978 | GGAG | MKEIKVNATKSEIEEFKKSPLWYDILRELNSWKRGFNQEMEAIVDDAATSNPSTASVLLHMGDINGRQKAVDYMIGIPDMFLSLLEDEKDGRDKTN |
Ga0265293_1000147860 | F039402 | AGGAG | MALTDYSEMEKEIADTPEPSVLKKGSEVKARIITVRSGISDKNNAQWFSVVYDVPDEPMAKEFSDFFWDLADRDKLEPKQAVRAMNQFKNFASAFDLDYSKPFDWEEDLVGLEGWLIVGIRKSDEYGEQNTVQKYLAKGGAGSTSGEGLPF |
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